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94
Cray T3E User’s Guide
Figure 9.2:
An example of a Cray TotalView session.
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Cray T3E
1
User’s Guide
1
Cray T3E User’s Guide 3
3
Contents
4
Contents 5
5
B Glossary 113
6
Bibliography 118
6
Index 120
6
Introduction
7
1.2 Usage policy
8
1.3 Overview of the system
9
1.4 Programming environment
9
10 Cray T3E User’s Guide
10
Chapter 1. Introduction 11
11
12 Cray T3E User’s Guide
12
Using the Cray T3E at CSC
13
2.2 Files
14
2.3 Editing files
16
2.5 Executing in batch mode
17
2.6 More information
18
The Cray T3E system
20
3.2 Distributed memory
21
3.3 Processing elements
21
3.4 Processor architecture
23
3.5 Local memory hierarchy
24
26 Cray T3E User’s Guide
26
Processing Element
27
I/O Controller
27
Interconnection
27
Network
27
3.9 File systems
28
3.10 Resource monitoring
29
30 Cray T3E User’s Guide
30
3.11 More information
31
Program development
32
4.3.1 BLAS
34
4.3.2 LAPACK
34
4.3.3 BLACS
35
4.3.4 PBLAS and ScaLAPACK
35
4.3.5 Details
35
36 Cray T3E User’s Guide
36
4.6 More information
38
Fortran programming
40
5.2 Basic usage
41
5.4 Compiler options
42
5.5 Optimization options
42
5.6 Optimizing for cache
44
5.7 Compiler directives
45
5.8 Fortran 90 modules
48
5.9 Source code preprocessing
49
5.10 More information
51
C and C++ programming
52
6.2 The C compiler
53
6.3 Calling Fortran from C
54
6.4 C compiler options
55
#pragma _CRI symmetric var
59
#pragma _CRI unroll [n]
59
6.6 The C++ compiler
61
6.7 More information
61
Interprocess communication
62
7.2.1 Format of the MPI calls
63
7.2.2 Some MPI routines
64
7.2.3 An example of using MPI
64
7.2.5 MPI data types
67
7.3.1 Using PVM on the T3E
68
#include <mpp/shmem.h>
71
INCLUDE ’mpp/shmem.fh’
71
7.4.2 Data addresses
72
7.4.4 Reduction routines
74
7.4.6 Example of using SHMEM
76
78 Cray T3E User’s Guide
78
0:c= 10121416
78
1:c= 2468
78
80 Cray T3E User’s Guide
80
Batch queuing system
81
82 Cray T3E User’s Guide
82
# QSUB -l p_mpp_t=7000
82
8.3 Status of the NQE job
83
84 Cray T3E User’s Guide
84
8.4 Deleting an NQE batch job
86
8.5 Queues
86
8.6 More information
87
Programming tools
88
9.2 Program Browser
89
9.3 Debugging programs
92
9.3.2 Examining core files
93
94 Cray T3E User’s Guide
94
9.4.1 MPP Apprentice
95
9.4.2 The appview command
98
9.4.3 PAT
98
9.5.1 The VAMPIRtrace library
100
102
9.5.3 More information
103
Miscellaneous notes
104
10.1.3 The CPU clock timer
105
10.1.4 Example of timing
106
108 Cray T3E User’s Guide
108
10.4 More information
110
About CSC
111
112 Cray T3E User’s Guide
112
Glossary
113
114 Cray T3E User’s Guide
114
Appendix B. Glossary 115
115
Metacomputer Environment
116
Bibliography
118
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